Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs13081960 chr3:80555492 A/G 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs13082472 chr3:80546521 T/C 6.02E-5 178 19.87 24.03 27.2 KM Plot
PCPG rs13082652 chr3:80546612 T/C 6.02E-5 178 19.87 24.03 27.2 KM Plot
PCPG rs13084667 chr3:80580905 G/A 6.99E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs13085514 chr3:53091900 C/T 7.36E-6 174 25.08 30.87 11.78 KM Plot
PCPG rs13089969 chr3:52918267 T/G 8.4E-6 174 25.4 26.05 10.3 KM Plot
PCPG rs13130577 chr4:154374409 T/G 0.000211 174 25 24.53 69.05 KM Plot
PCPG rs13140659 chr4:78947972 A/G 0 176 2.93 25.87 25.28 KM Plot
PCPG rs1318590 chr4:78966414 C/T 0 178 2.93 25.87 25.28 KM Plot
PCPG rs1320909 chr3:80582981 C/T 6.33E-5 177 19.53 24.53 27.4 KM Plot
PCPG rs1320911 chr3:80591552 T/C 0.000124 177 19.87 24.03 27.4 KM Plot
PCPG rs1320912 chr3:80591500 C/G 0.000124 177 19.87 24.03 27.4 KM Plot
PCPG rs13251519 chr8:140990959 G/A 6.1E-7 173 27.33 18.6 10.93 KM Plot
PCPG rs13252911 chr8:79840680 G/A 0.00018 172 25 25.92 32.6 KM Plot
PCPG rs13275339 chr8:13411455 T/G 0.000213 172 25.87 20.42 25.87 KM Plot